The disguise plot is almost as old as the APTX one. (If you count in MK, then disguises are even older. But I don't count it)
Since the first disguise used in DC was with yukiko in chapter 49. Where she disguised as the fat lady and pretended to be BO and kidnapped Conan. So Gosho planned such disguises early on. Since at that time (chapter 49), he still didn't thought that DC would run that long.
Meaning KID didn't introduce such disguises into DC. KID is just a guest role anyway.
But instead it was a early shown method that gosho would use.
First time it was used for a real BO case was with Vermouth. Since Vermouth can disguise herself too. But in the new york case, we saw Yukiko there too, which could have indicated a disguise plot.
Yukiko disguised Conan and Heiji during the vermouth arc. But since it was during the vermouth arc it kinda counts like one disguise arc.
After that arc, Vermouth used a disguise for her job. But we already knew that she can do that.
We think that Okiya is also using a disguise. Tho it could also be plastic surgery or dyed hair + glasses which make him close his eyes or he just looks like that cuz he's Okiya.
Also people think Bourbon is scar akai. In case that's true, then it's not "strange" that he was disguised by Vermouth for example. Since Yukiko was able to disguise Conan and Heiji too, but they weren't able to mimic the voices without the bow-tie. We also never heard Scar Akai talk around people that know akai :x
But we also know that Bourbon hates Akai. And from the "Shinichi is the murderer" case, the culprit did a surgery to look like the person he hates and blame shinichi for a murder. So, Bourbon could have done the same (which wouldn't be a disguise anymore). [inb4 scar akai goes out with jodie and will be a total ass to her XD]
In short: Disguise was introduced early on by yukiko and not KID. Disguises were used a lot during the Vermouth arc. True that. But the BO plots that followed, there weren't so many disguises used anymore, or more like, we can't know if those are such disguises that Vermouth and Yukiko are using.
Also, Gosho uses "silly" disguises too. Like the glasses Conan put on to fool Ran

Tho that didn't work so great with Haibara XD